PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta005130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NF-YC
Protein Properties Length: 202aa    MW: 22406.6 Da    PI: 6.6814
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-39382551PU_refplantGDBView CDS
gnl|UG|Pta#S21726372PU_unrefUnigeneView CDS
gnl|UG|Pta#S16798307PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.61e-54401431101
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql++fw +q   +e+a+dfk h+lPlarikki+kadedvkmisaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+ rtdifdflvdivp
  Pta005130  40 QLQAFWGNQmreVEQAQDFKTHSLPLARIKKIMKADEDVKMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAIGRTDIFDFLVDIVP 139
                89******9777799************************************************************************************* PP

      NF-YC  98 rdel 101
                rde 
  Pta005130 140 RDEF 143
                *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.84E-3236134IPR009072Histone-fold
PfamPF008082.2E-2162125IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.6E-3763140IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDQQQPTIPA LPQVGYGTNP YIAPPIGGPP HPQLASYHQQ LQAFWGNQMR EVEQAQDFKT  60
HSLPLARIKK IMKADEDVKM ISAEAPVVFA KACEMFILEL TLRSWIHTEE NKRRTLQKND  120
IAAAIGRTDI FDFLVDIVPR DEFKDEGLVI PRAAGAVPFM GPGDNVPSYY YVAQQAPNMA  180
AYAPPTQQMR SKAPAPPPHG SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B2e-4346140197NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.27150.0embryo| needle| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775725.13e-72PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008775726.13e-72PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008775727.13e-72PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008775728.13e-72PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008775729.13e-72PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG75e-69NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLB2LSM21e-147B2LSM2_9SPER; HAP5B
TrEMBLA9NKR81e-147A9NKR8_PICSI; Putative uncharacterized protein
STRINGBra003334.1-P7e-69(Brassica rapa)
STRINGLOC_Os02g07450.11e-68(Oryza sativa Japonica Group)
STRINGBGIOSGA007055-PA1e-68(Oryza sativa Indica Group)
STRINGORGLA02G0049900.11e-68(Oryza glaberrima)